AirHint found the following cheapest return flights from Heraklion (HER) to Munich (MUC) in September 2025 (see full year).

Return flights

01 Sep - 08 Sep	Discover Airlines	direct
15 Sep - 17 Sep	Aegean Airlines
15 Sep - 17 Sep	Condor	direct
29 Sep - 10 Oct	Aegean Airlines
09 Sep - 10 Sep	SKY express
24 Sep - 12 Oct	SKY express
27 Sep - 12 Oct	SKY express
23 Sep - 12 Oct	SKY express
28 Sep - 12 Oct	SKY express
21 Sep - 12 Oct	SKY express
22 Sep - 12 Oct	SKY express
29 Sep - 12 Oct	SKY express
30 Sep - 12 Oct	SKY express
25 Sep - 12 Oct	SKY express
09 Sep - 13 Sep	SKY express
10 Sep - 13 Sep	SKY express
03 Sep - 10 Sep	SKY express
02 Sep - 10 Sep	SKY express
03 Sep - 13 Sep	SKY express
02 Sep - 13 Sep	SKY express

Also check the deals for one-way flights from Heraklion to Munich in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from Heraklion to Munich in September from $271

Return flights