AirHint found the following cheapest return flights from Mombasa (MBA) to Nairobi (NBO) in June 2026 (see full year).

Return flights

15 Jun - 25 Jun	Safarilink	direct
15 Jun - 20 Jun	Safarilink	direct
15 Jun - 01 Jul	Safarilink	direct
26 Jun - 01 Jul	Safarilink	direct
15 Jun - 06 Jul	Safarilink	direct
26 Jun - 06 Jul	Safarilink	direct
26 Jun - 13 Jul	Safarilink	direct
21 Jun - 25 Jun	Safarilink	direct
21 Jun - 01 Jul	Safarilink	direct
21 Jun - 06 Jul	Safarilink	direct

Also check the deals for one-way flights from Mombasa to Nairobi in June.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from Mombasa to Nairobi in June from $343

Return flights