AirHint found the following cheapest return flights from Melbourne (MEL) to Tokyo (NRT) in September 2025 (see full year).

Return flights

28 Sep - 15 Oct	Royal Brunei
28 Sep - 17 Oct	Royal Brunei
27 Sep - 22 Oct	Royal Brunei
15 Sep - 22 Sep	Jetstar
12 Sep - 14 Sep	Batik Air Malaysia
11 Sep - 14 Sep	Jetstar
16 Sep - 23 Sep	Jetstar
25 Sep - 20 Oct	VietJet Air
27 Sep - 10 Oct	Royal Brunei
11 Sep - 17 Sep	Royal Brunei
12 Sep - 19 Sep	Batik Air
17 Sep - 23 Sep	Philippine Airlines
28 Sep - 04 Oct	Hainan Airlines
29 Sep - 11 Oct	Cebu Pacific
11 Sep - 13 Sep	Cathay Pacific
12 Sep - 16 Sep	Philippine Airlines
12 Sep - 23 Sep	Philippine Airlines
18 Sep - 08 Oct	Jetstar
26 Sep - 04 Oct	AirAsia X
29 Sep - 13 Oct	Cebu Pacific

Also check the deals for one-way flights from Melbourne to Tokyo in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from Melbourne to Tokyo in September from $585

Return flights