AirHint found the following cheapest return flights from Malta (MLA) to Manila (MNL) in September 2025 (see full year).

Return flights

15 Sep - 03 Oct	Ryanair
13 Sep - 20 Sep	KLM
12 Sep - 29 Sep	Air France
26 Sep - 15 Oct	Air France
09 Sep - 08 Oct	Air France
15 Sep - 01 Oct	Etihad Airways
01 Sep - 24 Sep	KLM
08 Sep - 08 Oct	KLM
17 Sep - 22 Sep	KLM
06 Sep - 08 Oct	KLM
04 Sep - 09 Sep	KM Malta Airlines
20 Sep - 21 Oct	KLM
12 Sep - 19 Sep	Ryanair
15 Sep - 30 Sep	Etihad Airways
10 Sep - 09 Oct	Etihad Airways
13 Sep - 27 Sep	KLM
12 Sep - 09 Oct	Etihad Airways
14 Sep - 30 Sep	KM Malta Airlines
14 Sep - 21 Sep	KM Malta Airlines
15 Sep - 02 Oct	Qatar Airways

Also check the deals for one-way flights from Malta to Manila in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

Book a cheap hotel in Manila

Cheap car rent in Manila

Cheapest return flights from Malta to Manila in September from $797

Return flights