AirHint found the following cheapest return flights from Malta (MLA) to Prague (PRG) in September 2025 (see full year).

Return flights

24 Sep - 27 Sep	Ryanair
23 Sep - 30 Sep	Ryanair
30 Sep - 04 Oct	Ryanair
30 Sep - 07 Oct	Ryanair
23 Sep - 27 Sep	Ryanair
23 Sep - 26 Sep	Ryanair
18 Sep - 22 Sep	KM Malta Airlines
25 Sep - 30 Sep	Ryanair
27 Sep - 30 Sep	KM Malta Airlines	direct
23 Sep - 30 Sep	KM Malta Airlines	direct
11 Sep - 13 Sep	KM Malta Airlines	direct
17 Sep - 24 Sep	Ryanair
20 Sep - 04 Oct	KM Malta Airlines

Also check the deals for one-way flights from Malta to Prague in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from Malta to Prague in September from $151

Return flights