AirHint found the following cheapest return flights from Munich (MUC) to Heraklion (HER) in June 2026 (see full year).

Return flights

19 Jun - 24 Jun	Discover Airlines	direct
16 Jun - 26 Jun	Lufthansa	direct
18 Jun - 23 Jun	Lufthansa	direct
15 Jun - 21 Jun	Condor
05 Jun - 08 Jun	Condor
22 Jun - 27 Jun	Condor	direct
03 Jun - 08 Jun	Aegean Airlines
03 Jun - 10 Jun	Condor	direct
03 Jun - 10 Jun	Aegean Airlines
01 Jun - 14 Jun	Condor	direct

Also check the deals for one-way flights from Munich to Heraklion in June.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

Book a cheap hotel in Heraklion

Cheap car rent in Heraklion

Cheapest return flights from Munich to Heraklion in June from $206

Return flights