AirHint found the following cheapest return flights from Munich (MUC) to Heraklion (HER) in September 2025 (see full year).

Return flights

10 Sep - 23 Sep	Condor	direct
17 Sep - 23 Sep	easyJet
09 Sep - 17 Sep	easyJet
19 Sep - 23 Sep	easyJet
16 Sep - 19 Sep	easyJet
05 Sep - 18 Sep	Condor	direct
09 Sep - 18 Sep	easyJet
10 Sep - 16 Sep	Condor
05 Sep - 19 Sep	Condor	direct
17 Sep - 19 Sep	easyJet
24 Sep - 14 Oct	Lufthansa
25 Sep - 02 Oct	easyJet
25 Sep - 08 Oct	easyJet
30 Sep - 30 Oct	Lufthansa
30 Sep - 02 Oct	Lufthansa
25 Sep - 13 Oct	easyJet
16 Sep - 07 Oct	easyJet
30 Sep - 07 Oct	Lufthansa
30 Sep - 05 Oct	Lufthansa
22 Sep - 08 Oct	Lufthansa

Also check the deals for one-way flights from Munich to Heraklion in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from Munich to Heraklion in September from $212

Return flights