AirHint found the following cheapest return flights from Munich (MUC) to Prague (PRG) in September 2025 (see full year).

Return flights

02 Sep - 08 Sep	Lufthansa	direct
25 Sep - 02 Oct	Lufthansa	direct
17 Sep - 03 Oct	Lufthansa	direct
26 Sep - 03 Oct	Lufthansa	direct
26 Sep - 09 Oct	Lufthansa	direct
30 Sep - 07 Oct	Lufthansa	direct
24 Sep - 27 Sep	LOT
22 Sep - 27 Sep	LOT
12 Sep - 16 Sep	easyJet
15 Sep - 05 Oct	Lufthansa	direct
26 Sep - 27 Sep	LOT
04 Sep - 07 Sep	LOT
10 Sep - 14 Sep	LOT
03 Sep - 08 Sep	LOT
12 Sep - 15 Sep	LOT
13 Sep - 17 Sep	LOT

Also check the deals for one-way flights from Munich to Prague in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from Munich to Prague in September from $197

Return flights