AirHint found the following cheapest return flights from Munich (MUC) to Prague (PRG) in September 2025 (see full year).

Return flights

04 Sep - 11 Sep	Lufthansa	direct
03 Sep - 09 Sep	Lufthansa	direct
08 Sep - 15 Sep	Lufthansa	direct
01 Sep - 07 Sep	Lufthansa	direct
01 Sep - 05 Sep	easyJet
02 Sep - 06 Sep	Lufthansa
01 Sep - 01 Sep	Lufthansa
10 Sep - 14 Sep	easyJet
10 Sep - 13 Sep	Luxair
02 Sep - 06 Sep	Lufthansa	direct

Also check the deals for one-way flights from Munich to Prague in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from Munich to Prague in September from 169€

Return flights