AirHint found the following cheapest return flights from San Diego (SAN) to Tokyo (NRT) in June 2026 (see full year).

Return flights

01 Jun - 09 Jun	Air Canada
27 Jun - 06 Jul	Alaska Airlines
04 Jun - 17 Jun	Air Canada
01 Jun - 08 Jun	Air Canada
02 Jun - 08 Jul	Air Canada
01 Jun - 15 Jun	Air Canada
29 Jun - 20 Jul	Alaska Airlines
04 Jun - 20 Jun	Alaska Airlines
28 Jun - 05 Jul	Alaska Airlines
19 Jun - 29 Jun	Alaska Airlines
15 Jun - 09 Jul	Air Canada
03 Jun - 24 Jun	Japan Airlines
12 Jun - 27 Jun	WestJet
19 Jun - 26 Jun	Air Canada
20 Jun - 27 Jun	Air Canada
29 Jun - 20 Jul	Japan Airlines	direct
27 Jun - 06 Jul	Japan Airlines	direct

Also check the deals for one-way flights from San Diego to Tokyo in June.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from San Diego to Tokyo in June from $919

Return flights