AirHint found the following cheapest return flights from Zakynthos (ZTH) to Malta (MLA) in September 2025 (see full year).

Return flights

24 Sep - 01 Oct	Volotea
24 Sep - 30 Sep	Volotea
21 Sep - 24 Sep	SKY express
24 Sep - 28 Sep	Volotea
24 Sep - 25 Sep	Volotea
24 Sep - 27 Sep	Volotea
24 Sep - 24 Sep	Volotea
24 Sep - 26 Sep	Volotea
17 Sep - 20 Oct	Volotea
24 Sep - 29 Sep	Volotea
21 Sep - 25 Sep	SKY express
18 Sep - 24 Sep	Volotea
18 Sep - 23 Oct	Volotea
18 Sep - 24 Oct	Volotea
18 Sep - 21 Oct	Volotea
18 Sep - 20 Oct	Aegean Airlines
18 Sep - 22 Oct	Wizz Air

Also check the deals for one-way flights from Zakynthos to Malta in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from Zakynthos to Malta in September from $168

Return flights